Mid 16th century. Apparently a variant (by metathesis) of remunerate, probably arising by folk-etymological association with words in numer-.
renumerate2
/riːˈnjuːməreɪt/
verb
[with object]To number or enumerate again. In quot. 1656: to pay (money) again.
Origin
Early 17th century; earliest use found in Life & Death Gamaliell Ratsey. From classical Latin renumerāt-, past participial stem of renumerāre to pay out, pay back, to report a count of from re- + numerāre.